PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G158900.1.p

Common Name

LOC101770204, SETIT_014218mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

G2-like

Protein Properties

Length: 283aa MW: 30238 Da PI: 5.7683

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G158900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.5	1.4e-28	15	69	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prlrWt++LH rF av+qLGG++kAtPk++l++m v+ Ltl+h+kSHLQkYRl Seita.6G158900.1.p 15 RPRLRWTSQLHGRFELAVAQLGGADKATPKSVLRAMAVPELTLYHLKSHLQKYRL 69 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-29	13	73	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-14	15	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-21	16	70	IPR006447	Myb domain, plants
Pfam	PF14379	1.0E-15	131	170	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MSSSGGGQQQ QGEGRPRLRW TSQLHGRFEL AVAQLGGADK ATPKSVLRAM AVPELTLYHL 60 KSHLQKYRLA VSRGLITTSP GDNGEGANDR SSSSENEYDE DAVAELHGAF TADDGAGAKE 120 GLCDSSRSMA RMHREVQRKL QEQIEVQRHL QLRIEAQGRY LQSVLHRAYE VLSDDHNLGS 180 PAATELSELA SAVESGCLSS SSSLSPSPPR RRAAGSCVTS SSSWEAESHA AAGSKRPCTC 240 AVEQPAQGKR TFLQQSHDHG AEEADADAEA EDGSSSEIDL NR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT064604	5e-63	BT064604.1 Zea mays full-length cDNA clone ZM_BFc0189E19 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973515.1	0.0	PREDICTED: myb family transcription factor APL-like
TrEMBL	K3YIZ9	0.0	K3YIZ9_SETIT; Uncharacterized protein
STRING	Si014218m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11264	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	9e-45	G2-like family protein

Link Out ? help Back to Top
Phytozome	Seita.6G158900.1.p
Entrez Gene	101770204